
# gv-rep requirements
# Specify the version constraint for setuptools
setuptools

# Basic libraries for handling VCF files
vcfpy

# Other useful libraries for data handling and analysis
pandas
numpy
scipy

# Optional: Biopython for additional bioinformatics tools
biopython

# kipoiseq
kipoiseq

# pyfaidx
pyfaidx

# sgkit
sgkit

# pyliftover
pyliftover

# tokenizers
tokenizers

# mavehgvs
mavehgvs

# BEND
webdataset
git-lfs
einops
omegaconf

# wandb
wandb

# Olmo
boto3


# tqdm
tqdm

# pytorch-lightning==1.9.3

# conda install -c pytorch faiss-cpu=1.8.0

# hugging face
datasets
transformers==4.37.2
peft
bitsandbytes