Learning Concept Bottleneck Models from Mechanistic Explanations

Antonio De Santis, Schrasing Tong, Marco Brambilla, Lalana Kagal

International Conference on Learning Representations 2026 (ICLR 2026) Conference

Concept Bottleneck Models (CBMs) aim for ante-hoc interpretability by learning a bottleneck layer that predicts interpretable concepts before the decision. State-of-the-art approaches typically select which concepts to learn via human specification, open knowledge graphs, prompting an LLM, or using general CLIP concepts. However, concepts defined a-priori may not have sufficient predictive power for the task or even be learnable from the available data. As a result, these CBMs often significantly trail their black-box counterpart when controlling for information leakage. To address this, we introduce a novel CBM pipeline named Mechanistic CBM (M-CBM), which builds the bottleneck directly from a black-box model’s own learned concepts. These concepts are extracted via Sparse Autoencoders (SAEs) and subsequently named and annotated on a selected subset of images using a Multimodal LLM. For fair comparison and leakage control, we also introduce the Number of Contributing Concepts (NCC), a decision-level sparsity metric that extends the recently proposed NEC metric. Across diverse datasets, we show that M-CBMs consistently surpass prior CBMs at matched sparsity, while improving concept predictions and providing concise explanations. Our code is available at https://github.com/Antonio-Dee/M-CBM.