Minimax Sample Complexity of Graph Neural Networks: Lower Bounds and Structural Effects

Ahmad Ghasemi, Hossein Pishro-Nik

International Conference on Learning Representations 2026 (ICLR 2026) Conference

Graph Neural Networks (GNNs) achieve strong empirical performance across domains, yet their fundamental statistical behavior remains poorly understood. This paper develops a minimax analysis of ReLU message-passing GNNs with explicit architectural assumptions, in both inductive (graph-level) and transductive (node-level) settings. For arbitrary graphs without structural constraints, we show that the worst-case generalization error scales as $\sqrt{\log d / n}$ with sample size $n$ and input dimension $d$, matching the $1/\sqrt{n}$ behavior of feed-forward networks. Under a spectral--homophily condition combining strong label homophily and bounded spectral expansion, we prove a stronger minimax lower bound of $d/\log n$ for transductive node prediction. We complement these results with a systematic empirical study on three large-scale benchmarks (ogbn\_arxiv, ogbn\_products\_50k, Reddit\_50k) and two controlled synthetic datasets representing the worst-case and structured regimes of our theory. All benchmark graphs we study fall in the slow-mixing, bottlenecked regime captured by our spectral-homophily condition, and ratio-based scaling tests show error decay consistent with the $d/\log n$ rate in real and structured settings, while the worst-case synthetic dataset follows the $\sqrt{\log d / n}$ curve. Together, these results indicate that practical GNN tasks often operate in the spectral-homophily regime, where our lower bound $d/\log n$ is tight and effective sample complexity is driven by graph topology rather than universal $1/\sqrt{n}$ behavior.